Chakravarthi Kanduri

• Pavlović, Milena; al Hajj, Ghadi; Kanduri, Chakravarthi; Pensar, Johan; Wood, Mollie Elizabeth & Sollid, Ludvig Magne [Show all 8 contributors for this article] (2024). Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics. Nature Machine Intelligence. 6(1), p. 15–24. doi: 10.1038/s42256-023-00781-8.
• Kanduri, Chakravarthi; Scheffer, Lonneke; Pavlović, Milena; Rand, Knut Dagestad; Chernigovskaia, Maria & Pirvandy, Oz [Show all 9 contributors for this article] (2023). simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. GigaScience. ISSN 2047-217X. 12, p. 1–16. doi: 10.1093/gigascience/giad074. Full text in Research Archive
• Kanduri, Chakravarthi; Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Chernigovskaia, Maria & Greiff, Victor [Show all 7 contributors for this article] (2022). Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. GigaScience. ISSN 2047-217X. 11(05). doi: 10.1093/gigascience/giac046. Full text in Research Archive
• Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila & Vazov, Nikolay Aleksandrov [Show all 41 contributors for this article] (2021). The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nature Machine Intelligence. 3(11), p. 936–944. doi: 10.1038/s42256-021-00413-z.
• du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Srinivasa Kalyana Chakravarthi & Sandve, Geir Kjetil [Show all 13 contributors for this article] (2020). B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. Journal of Experimental Medicine (JEM). ISSN 0022-1007. 217:e20190860.(2), p. 1–14. doi: 10.1084/jem.20190860. Full text in Research Archive
• Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne (2019). Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. United European Gastroenterology Journal (UEG Journal). ISSN 2050-6406. 0(0), p. 1–9. doi: 10.1177/2050640619862461.
• Christophersen, Asbjørn; Lund, Eivind Gard; Snir, Omri; Solà, Elsa; Kanduri, Srinivasa Kalyana Chakravarthi & Dahal-Koirala, Shiva [Show all 15 contributors for this article] (2019). Distinct phenotype of CD4+ T cells driving celiac disease identified in multiple autoimmune conditions. Nature Medicine. ISSN 1078-8956. 25(5), p. 734–737. doi: 10.1038/s41591-019-0403-9. Full text in Research Archive
• Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil (2019). Colocalization analyses of genomic elements: approaches, recommendations and challenges. Bioinformatics. ISSN 1367-4803. 35(9), p. 1615–1624. doi: 10.1093/bioinformatics/bty835. Full text in Research Archive
• Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil (2018). Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. BMC Bioinformatics. ISSN 1471-2105. 19(481). doi: 10.1186/s12859-018-2438-1. Full text in Research Archive
• Hutin, David; Tamblyn, Laura; Gomez, Alvin; Grimaldi, Giulia; Soedling, Helen & Cho, Tiffany [Show all 11 contributors for this article] (2018). Hepatocyte-Specific Deletion of TIPARP, a Negative Regulator of the Aryl Hydrocarbon Receptor, Is Sufficient to Increase Sensitivity to Dioxin-Induced Wasting Syndrome. Toxicological Sciences. ISSN 1096-6080. 165(2), p. 347–360. doi: 10.1093/toxsci/kfy136. Full text in Research Archive
• Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa & Bock, Christoph [Show all 15 contributors for this article] (2018). Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Research (NAR). ISSN 0305-1048. 46(1), p. W186–W193. doi: 10.1093/nar/gky474. Full text in Research Archive

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• Kanduri, Chakravarthi; Sandve, Geir Kjetil Ferkingstad; Hovig, Eivind; De, Subhajyoti & Layer, Ryan (2021). Editorial: Genomic Colocalization and Enrichment Analyses. Frontiers in Genetics. ISSN 1664-8021. 11. doi: 10.3389/fgene.2020.617876.

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