Swarm

Papers

• Mahé F, Czech L, Stamatakis A, Quince C, de Vargas C, Dunthorn M, Rognes T (2021)
  Swarm v3: towards tera-scale amplicon clustering
  Bioinformatics (in press) doi 10.1093/bioinformatics/btab493
• Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M (2015)
  Swarm v2: highly-scalable and high-resolution amplicon clustering
  PeerJ, 3, e1420. doi 10.7717/peerj.1420
• Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M (2014)
  Swarm: robust and fast clustering method for amplicon-based studies
  PeerJ, 2, e593. doi 10.7717/peerj.593

Software availability

Swarm repository on GitHub 

Groups involved

Rognes group