Bayram Cevdet Akdeniz

• Frei, Oleksandr; Hindley, Guy; Shadrin, Alexey; van der Meer, Dennis; Akdeniz, Bayram Cevdet & Hagen, Espen [Vis alle 16 forfattere av denne artikkelen] (2024). Improved functional mapping of complex trait heritability with GSA-MiXeR implicates biologically specific gene sets. Nature Genetics. ISSN 1061-4036. 56(6), s. 1310–1318. doi: 10.1038/s41588-024-01771-1.
• Akdeniz, Bayram Cevdet ; Frei, Oleksandr; Hagen, Espen; Filiz, Tahir Tekin; Karthikeyan, Sandeep & Pasman, Joëlle [Vis alle 18 forfattere av denne artikkelen] (2024). COSGAP: COntainerized Statistical Genetics Analysis Pipelines. Bioinformatics Advances. ISSN 2635-0041. 4(1). doi: 10.1093/bioadv/vbae067.
• Usturalı, Umut Eren; Akdeniz, Bayram Cevdet ; Tugcu, Tuna & Pusane, Ali Emre (2023). Low-Complexity Timing Methods for Molecular Communication via Diffusion. IEEE Transactions on Molecular, Biological, and Multi-Scale Communications. ISSN 2332-7804. 9(4), s. 478–482. doi: 10.1109/TMBMC.2023.3305390.
• Yaylali, Gokberk; Akdeniz, Bayram Cevdet ; Tugcu, Tuna & Pusane, Ali Emre (2023). Channel Modeling for Multi-Receiver Molecular Communication Systems. IEEE Transactions on Communications. ISSN 0090-6778. 71(8), s. 4499–4512. doi: 10.1109/TCOMM.2023.3281415.
• Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez-Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey & Puustusmaa, Mikk [Vis alle 12 forfattere av denne artikkelen] (2023). A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population. Cancers. ISSN 2072-6694. 15(16). doi: 10.3390/cancers15164124. Fulltekst i vitenarkiv
• Akdeniz, Bayram Cevdet ; Frei, Oleksandr; Shadrin, Alexey; Vetrov, Dmitry; Kropotov, Dmitry & Dale, Anders [Vis alle 8 forfattere av denne artikkelen] (2022). Finemap-MiXeR: A variational Bayesian approach for genetic finemapping. bioRxiv. ISSN 2692-8205.
• Akdeniz, Bayram Cevdet ; Frei, Oleksandr; Hagen, Espen; Filiz, Tahir Tekin; Karthikeyan, Sandeep & Pasman, Joëlle [Vis alle 18 forfattere av denne artikkelen] (2022). COGEDAP: A COmprehensive GEnomic Data Analysis Platform. arXiv.org. ISSN 2331-8422.
• Egan, Malcolm; Akdeniz, Bayram Cevdet & Tang, Bao Quoc (2021). Equilibrium signaling in spatially inhomogeneous diffusion and external forces. IEEE Transactions on Molecular, Biological, and Multi-Scale Communications. ISSN 2332-7804. 7(2), s. 106–110. doi: 10.1109/TMBMC.2021.3054908.
• Akdeniz, Bayram Cevdet & Egan, Malcolm (2021). Molecular Communication for Equilibrium State Estimation in Biochemical Processes on a Lab-on-a-Chip. IEEE Transactions on Nanobioscience. ISSN 1536-1241. 20(2), s. 193–201. doi: 10.1109/TNB.2021.3062473.
• Egan, Malcolm; Akdeniz, Bayram Cevdet & Tang, Bao Quoc (2021). Stochastic reaction and diffusion systems in molecular communications: Recent results and open problems. Digital signal processing (Print). ISSN 1051-2004. doi: 10.1016/j.dsp.2021.103117.
• Yetimoglu, Oguzhan; Avci, M.Kerem; Akdeniz, Bayram Cevdet ; Yilmaz, H. Birkan; Pusane, Ali E. & Tugcu, Tuna (2021). Multiple transmitter localization via single receiver in 3-D molecular communication via diffusion. Digital signal processing (Print). ISSN 1051-2004. doi: 10.1016/j.dsp.2021.103185.
• Oncu, Abdullah Enes; Ozdemir, Halil Umut; Orhan, Halil Ibrahim; Cevdet Akdeniz, Bayram; Toprakci, Asaf & Aslihak, Mehmet Anil [Vis alle 10 forfattere av denne artikkelen] (2021). Analytical investigation of long-time diffusion dynamics in a synaptic channel with glial cells. IEEE Communications Letters. ISSN 1089-7798. 25(11), s. 3444–3448. doi: 10.1109/LCOMM.2021.3105613.
• Cevdet Akdeniz, Bayram & Egan, Malcolm (2020). A Molecular Communication Scheme to Estimate the State of Biochemical Processes on a Lab-on-a-Chip, NanoCoCoA '20: Proceedings of the 1st ACM International Workshop on Nanoscale Computing, Communication, and Applications. Association for Computing Machinery (ACM). ISSN 978-1-4503-8116-1. s. 8–13. doi: 10.1145/3416006.3431272.
• Akdeniz, Bayram Cevdet ; Egan, Malcolm & Tang, Bao Quoc (2020). Equilibrium Signaling: Molecular Communication Robust to Geometry Uncertainties . IEEE Transactions on Communications. ISSN 0090-6778. 69(2), s. 752–765. doi: 10.1109/TCOMM.2020.3034662.

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• Shorter, John; Pasman, Joëlle; Jangmo, Andreas; Kurvits, Siim; Meijsen, Joeri & Frei, Oleksandr [Vis alle 15 forfattere av denne artikkelen] (2022). A LARGE META-ANALYSIS ACROSS FOUR NORDIC COUNTRIES REVEALS SEVERAL SIGNIFICANT GENETIC ASSOCIATIONS FOR EARLY ONSET MAJOR DEPRESSIVE DISORDER. European Neuropsychopharmacology. ISSN 0924-977X.
• Pasman, Joëlle; Shorter, John; Jangmo, Andreas; Kurvits, Siim; Meijsen, Joeri & Frei, Oleksandr [Vis alle 13 forfattere av denne artikkelen] (2022). IS GENETIC RISK FOR EARLY ONSET MAJOR DEPRESSIVE DISORDER ASSOCIATED WITH MORE SEVERE CLINICAL FEATURES THAN BROAD MAJOR DEPRESSIVE DISORDER? European Neuropsychopharmacology. ISSN 0924-977X.
• Akdeniz, Bayram Cevdet ; Bøen, Rune; Frei, Oleksandr; Hovig, Eivind; Andreassen, Ole & Sønderby, Ida Elken (2022). LARGE-SCALE ANALYSIS WITH SOFTWARE CONTAINERS IN ENIGMA-CNV–AN INTERNATIONAL WORKING GROUP TO STUDY RECURRENT COPY NUMBER VARIANTS AND BRAIN MEASURES. Neuropsychopharmacology, 2022.
• Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey & Puustusmaa, Mikk [Vis alle 11 forfattere av denne artikkelen] (2022). Implementation of polygenic risk score guided breast cancer prediction in Norwegian data. NSHG-PM 2022.
• Corfield, Elizabeth Claire; Shadrin, Alexey; Frei, Oleksandr; Rahman, Zillur; Lin, Aihua & Athanasiu, Lavinia [Vis alle 15 forfattere av denne artikkelen] (2022). Genetic profile of the Norwegian Mother, Father, and Child Cohort Study (MoBa): Results from the MoBaPsychGen pipeline.
• Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua & Athanasiu, Lavinia [Vis alle 26 forfattere av denne artikkelen] (2022). The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: the MoBaPsychGen_v1 pipeline.
• Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua & Athanasiu, Lavinia [Vis alle 26 forfattere av denne artikkelen] (2022). The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1. Cold Spring Harbor Laboratory Press (CSHL). ISSN 2692-8205. (2022). Vis sammendrag

  Background: The Norwegian Mother, Father, and Child Cohort Study (MoBa) is a population-based pregnancy cohort, which includes approximately 114,500 children, 95,200 mothers, and 75,200 fathers. Genotyping of MoBa has been conducted through multiple research projects, spanning several years; using varying selection criteria, genotyping arrays, and genotyping centres. MoBa contains numerous interrelated families, which necessitated the implementation of a family-based quality control (QC) pipeline that verifies and accounts for diverse types of relatedness. Methods: The MoBaPsychGen pipeline, comprising pre-imputation QC, phasing, imputation, and post-imputation QC, was developed based on current best-practice protocols and implemented to account for the complex structure of the MoBa genotype data. The pipeline includes QC on both single nucleotide polymorphism (SNP) and individual level. Phasing and imputation were performed using the publicly available Haplotype Reference Consortium release 1.1 panel as a reference. Information from the Medical Birth Registry of Norway and MoBa questionnaires were used to identify biological sex, year of birth, reported parent-offspring (PO) relationships, and multiple births (only available in the offspring generation). Results: In total, 207,569 unique individuals (90% of the unique individuals included in the study) and 6,981,748 SNPs passed the MoBaPsychGen pipeline. The relatedness checks performed throughout the pipeline allowed identification of within-generation and across-generation first-degree, second-degree, and third-degree relatives. The individuals passing post-imputation QC comprised 64,471 families ranging in size from singletons to 84 unique individuals (singletons are included as families as other family members may not have been genotyped, imputed, or passed post-imputation QC). The relationships identified include 287 monozygotic twin pairs, 22,884 full siblings, 117,004 PO pairs, 23,299 second-degree relative pairs, and 10,828 third-degree relative pairs. Discussion: MoBa contains a highly complex relatedness structure, with a variety of family structures including singletons, PO duos, full (mother, father, child) PO trios, nuclear families, blended families, and extended families. The availability of robustly quality-controlled genetic data for such a large cohort with a unique extended family structure will allow many novel research questions to be addressed. Furthermore, the MoBaPsychGen pipeline has potential utility in similar cohorts.

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